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Image Analysis Software for Microscopy

This sections showcases a selection of tools for microscopic image analysis and the biological
problems that inspired their development.

3D Nuclear Segmentation

The 3D nuclear segmentation software detects interphase nuclei and mitotic chromosomes in image stacks acquired by confocal microscopy. The tool development was motivated by a project to track and measure nuclei in Drosophila embryogenesis.
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TLM-Converter
Image data reorganization for time-lapse microscopy


The TLM-Converter fragments or concatenates multi-dimensional images to facilitate downstream image quantification and visualization. The tool was developed for time-lapse images of Drosophila embryogenesis and metamrophosis.
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TLM-Explorer

Custom software for the exploration, annotation and quantification of time-lapse images. TLM-Explorer was designed for the phenotypic analysis of muscle development in Drosophila metamorphosis.
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Biological Discovery through
Quantitative Microscopy
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